Researchers have reverse-engineered a piece of malware named Fast16. It’s almost certainly state-sponsored, probably US in origin, and was deployed against Iran years before Stuxnet:

“…the Fast16 malware was designed to carry out the most subtle form of sabotage ever seen in an in-the-wild malware tool: By automatically spreading across networks and then silently manipulating computation processes in certain software applications that perform high-precision mathematical calculations and simulate physical phenomena, Fast16 can alter the results of those programs to cause failures that range from faulty research results to catastrophic damage to real-world equipment.”

Another news article.

Lots of interesting details at the links.

Wired has the story:

Shortly after the first set of explosions, Iranians received bursts of notifications on their phones. They came not from the government advising caution, but from an apparently hacked prayer-timing app called BadeSaba Calendar that has been downloaded more than 5 million times from the Google Play Store.

The messages arrived in quick succession over a period of 30 minutes, starting with the phrase ‘Help has arrived’ at 9:52 am Tehran time, shortly after the first set of explosions. No party has claimed responsibility for the hacks.

It happened so fast that this is most likely a government operation. I can easily envision both the US and Israel having hacked the app previously, and then deciding that this is a good use of that access.